Scientific Papers and Reports

This is an annotated list of the published papers and reports that have included REEF data. The list is in chronological order. Papers that are available for viewing in .pdf format are noted.

Also see the Projects page for links to additional reports.

Green, S.J., N.K. Dulvy, A.L. M. Brooks, J.L. Akins, A.B. Cooper, S. Miller, and I.M. Côté. 2014. Linking removal targets to the ecological effects of invaders: a predictive model and field test.

Ecological Applications.

The study, conducted by Dr. Stephanie Green (OSU/REEF), Lad Akins (REEF), and others, confirms for the first time that controlling lionfish populations in the western Atlantic Ocean can pave the way for a recovery of native fish. Even if it's one speared fish at a time, data are showing that removals can be effective. And not every lionfish need be removed…the research findings document that reducing lionfish numbers by specified amounts will allow a rapid recovery of native fish biomass. Over 18 months, the biomass of native prey fishes increased an average 50-70% on reefs where lionfish numbers were suppressed below target levels predicted to cause prey depletion. On reefs where lionfish numbers remained higher than target levels, the biomass of prey fishes decreased by a further 50%. While complete eradication of lionfish from the Caribbean is not likely, groups are actively removing them from coastal areas (mostly via spear and net). This study is a first step in showing that strategic local efforts that suppress the invasion to low levels can help protect and recover native fish communities affected by lionfish. This ground-breaking invasive lionfish research was conducted as a collaboration between REEF, Oregon State University, Simon Fraser University, and the Cape Eleuthera Institute.

Lotterhos, KE, SJ Dick, and DR Haggarty. 2014. Evaluation of rockfish conservation area networks in the United States and Canada relative to the dispersal distance for black rockfish (Sebastes melanops).

Evolutionary Applications. (2014) 238–259

REEF data were used to validate population estimates of Black Rockfish throughout western Canada, Washington State, and Oregon. These results were then used to evaluate the efficacy of marine reserve networks in these areas. The authors of the study estimated the scale of dispersal from genetic data in the black rockfish, and compared this estimate with the distance between Rockfish Conservation Areas that aim to protect this species (essentially evaluating whether the reserves are "connected" enough). Their findings showed that within each country, the distance between conservation areas was generally well connected. The distance between the networks in the two countries, however, was greater than the average dispersal per rockfish generation.

Jackson, AM, BX Semmens, Y Sadovy de Mitcheson, RS Nemeth, SA Heppell, PG Bush, A Aguilar-Perera, JAB Claydon, MC Calosso, KS Sealey, MT Schärer, G Bernardi. 2014. Population structure and phylogeography in Nassau Grouper (Epinephelus striatus), a mass-aggregating marine fish.

PLoS ONE. DOI: 10.1371/journal.pone.0097508

This study, co-authored by scientists from REEF's Grouper Moon Project, evaluated genetic connectedness between Nassau Grouper populations throughout the Caribbean. The authors obtained genetic tissue samples from 620 Nassau Grouper from 19 sites across 9 countries, including the Cayman Islands. They found evidence for strong genetic differentiation among Nassau Grouper subpopulations throughout the Caribbean. These results suggest that, despite a lack of physical barriers, Nassau grouper form multiple distinct subpopulations in the Caribbean Sea. Oceanography (regional currents, eddies) likely plays an important role in retaining larvae close to spawning sites at both local and regional spatial scales. These findings highlight the importance of conservation initiatives such at REEF's Grouper Moon program in the Cayman Islands.

Côté​, IM, L Akins, E Underwood, J Curtis-Quick, SJ Green. 2014. Setting the record straight on invasive lionfish control: Culling works.

PeerJ PrePrints. 2:e398v1

Frequent culling of the invasive Indo-Pacific Lionfish throughout the Caribbean has been shown to cause a shift towards more wary and reclusive behaviour by lionfish, which has prompted calls for halting culls. This paper, co-authored by REEF Lionfish Program researchers, addresses those concerns and reviews research conducted by REEF and other research efforts. Culling successfully lowers lionfish numbers and has been shown to stabilise or even reverse declines in native prey fish. Partial culling is often as effective as complete local eradication, yet requires significantly less time and effort. Abandoning culling altogether would therefore be seriously misguided and a hindrance to conservation. The authors also offer suggestions for how to design removal programs that minimize behavioural changes and maximize culling success.

Côté, IM, SJ Green, JA Morris Jr, JL Akins, D Steinke. 2013. Diet richness of invasive Indo-Pacific lionfish revealed by DNA barcoding.

Marine Ecology Progress Series. 72: 249–256

Invasive lionfish in the western Atlantic are known to be voracious predators. Their unusual hunting behavior suggests that they could prey on most fish species within their gape size limits. Significant research by REEF researchers and others has been conducted looking at stomach contents of lionfish to identify prey. However, relatively few prey species have been identified because of the challenge of identifying partly digested prey. It is also difficult to know how well the identifiable diet reflects the unidentified portion. The authors of this study addressed this issue by DNA-barcoding unidentifiable fish items from the stomachs of 130 lionfish. They identified 37 prey species, half of which had previously not been recorded. The visually identifiable species only accounted for 25% of the total prey items, making it clear that extrapolating total prey from the identifiable portion is not accurate. The barcoding technique used can increase the ability to predict the impacts of invasive predators on recipient communities.

Holt, BG, R Rioja-Nieto, MA MacNeil, J Lupton, and C Rahbek. 2013. Comparing Diversity Data Collected Using a Protocol Designed for Volunteers with Results from a Professional Alternative.

Methods in Ecology and Evolution. doi: 10.1111/2041-210X.12031

Research conducted by Dr. Ben Holt from University of East Angila in the UK shows that methods to record marine diversity used by REEF surveyors returned results consistent with techniques favoured by peer-reviewed science. The findings give weight to the growing phenomenon of citizen science programs such as REEF's Volunteer Survey Project. The field study compared methods used by REEF volunteer SCUBA divers with those used by professional scientists to measure the variety of fish species in three Caribbean sites in the Turks and Caicos. The divers surveyed the sites using two methods – the 'belt transect', used in peer reviewed fish diversity studies, and the 'roving diver technique', used by REEF volunteers. Two teams of 12 divers made 144 separate underwater surveys across the sites over four weeks. While the traditional scientific survey revealed sightings of 106 different types of fish, the volunteer technique detected greater marine diversity with a total of 137 in the same waters. Dr Holt led the research in partnership with the Centre for Marine Resource Studies in the Caribbean and the University of Copenhagen, Denmark. He said: "The results of this study are important for the future of citizen science and the use of data collected by these programs. Allowing volunteers to use flexible and less standardised methods has important consequences for the long term success of citizen science programs. Amateur enthusiasts typically do not have the resources or training to use professional methodology. Our study demonstrates the quality of data collected using a volunteer method can match, and in some respects exceed, protocols used by professional scientists."

Wolfe, JR and CV Pattengill-Semmens. 2013. Estimating Fish Populations From REEF Citizen Science Volunteer Diver Order-of-Magnitude Surveys.

CalCOFI Reports. 54 (2013)

This paper describes several models to convert order-of-magnitude count data that are collected during REEF Roving Diver Technique (RDT) surveys to a numeric mean, and demonstrate that with a sufficient number of surveys, estimates of the mean with a reasonably small confidence interval can be attained. For each model, parameter estimates and associated confidence intervals were derived from 292 RDT surveys where precise counts were also made. Models were compared using the small sample Akaike Information Criteria (AICc). The best-fitting model uses disaggregated bin-count data and considers the relative proportion of counts in adjacent bins. A companion paper was published in the same CalCOFI issue that uses the model to evaluate population trends in rocky reef fish species along the Monterey Peninsula region in central California.

Wolfe, JR and CV Pattengill-Semmens. 2013. Fish Population Fluctuation Estimates Based on Fifteen Years of REEF Volunteer Diver Data For the Monterey Peninsula, California.

CalCOFI Reports. 54 (2013): 127-140

A database of fish surveys conducted by volunteer recreational divers trained by REEF was used to examine fish populations in Monterey Peninsula, California, between 1997 and 2011. Over 3,000 surveys were conducted as part of this ongoing citizen science effort. The analysis was conducted using a numerical conversion method to calculate population estimates from REEF log-scale data (this method was described in a companion paper published in the same CalCOFI Reports issue). Variations in relative density over time are reported for 18 fish species, including several fisheries-targeted species. Two recruitment pulses of young-of-the-year rockfish (Sebastes spp.) were observed over the study period, with subsequent increases in older rockfish. Several predator species increased and subsequently declined, peaking two years after prey populations. Strong concordance was found between REEF data and those collected by Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO), a consortium of academic institutions. Results show that data collected by REEF has great potential to augment and strengthen professional research data and serve as a valuable baseline to evaluate marine reserves.

Ward-Paige CA, B Davis, and B Worm. 2013. Global Population Trends and Human Use Patterns of Manta and Mobula Rays.

PLoS ONE. 8(9): e74835. doi:10.1371/journal.pone.0074835

Despite being the world’s largest rays and providing significant revenue through dive tourism, little is known about the population status, exploitation, and trade volume of the Mobulidae (mobulids; Manta and Mobula spp.). There is anecdotal evidence, however, that mobulid populations are declining, largely due to the recent emergence of a widespread trade for their gill rakers. Researchers from Dalhousie University and eShark.org used expert divers’ observations from two citizen science programs, REEF's Volunteer Fish Survey Project and eShark.org, to describe global manta and devil ray abundance trends and human use patterns. The study highlights the relative rarity of aggregation sites on a global scale and reveals that many populations appear to be declining. The authors warn that newly emerging fisheries for the rays gill-­‐rakers likely exceed their ability to recover. The study also demonstrates the deficiency of official catch reports, as only four countries have ever reported landing manta or devil rays– Indonesia, Liberia, Spain and Ecuador. However, numerous diver reports compiled in the paper illustrate that many other countries are regularly landing and selling these rays without reporting.

Auster PJ, L Kracker, V Price, E Heupel, G McFall, and D Grenda. 2013. Behavior Webs of Piscivores at Subtropical Live-Bottom Reefs.

Bulletin of Marine Science. 89(1):377–396

The authors describe the behavioral interactions of piscivorous mid-water and demersal fishes at subtropical live-bottom reefs off the coast of Georgia and off the west coast of Florida in the northeast Gulf of Mexico. The observations are used to construct a topological behavior web of the interactions of mid-water and demersal piscivores, their prey, and those associated species that modify predator-prey interactions. Results show that inter-specific behavioral interactions are common attributes of piscivores in these reef fish communities. The authors propose a framework for assessing the demographic consequences of such interactions. Data for this study were collected using a modified Roving Diver Technique, the method employed by REEF surveyors. One of the co-authors, Dave Grenda, is a member of REEF's Advanced Assessment Team.

Design by Joanne Kidd, development by Ben Weintraub